Welcome to ParticleSpy’s documentation!

ParticleSpy is a python package which eases segmentation and analysis of nanoparticles from electron microscopy data. It extends the functionality of the Hyperspy package in order to easily segment and analyse regions of Hyperspy signal objects.

Contents:

• Getting started
  • Installing ParticleSpy
    • Install ParticleSpy
    • Installing from Github
  • Using ParticleSpy
  • Saving and Loading Particles
• Segmentation
  • Using a Pre-Segmented Mask
  • Using the Segmentation User Interface
    • Parameter Picking for Automated Segmentation
    • Manual Segmentation
  • Filter-Based Clustering and Segmentation
  • Trainable Segmentation
• Particle Analysis
  • Combining Particles from Multiple Images
  • Spectrum Analysis
  • Particle Segmentation with a Pre-Generated Mask
  • Cluster Particles Based on Properties
  • Normalize Particle Image Sizes
• Plotting and Saving
  • Plotting Radial Profiles
  • Saving Particle Images and Maps
• Time Series

Indices and tables

• Index

• Module Index

• Search Page